Read the first chapter of The Bare Bones

BareBmecDue to requests for a sampler of my forthcoming book from Indiana University Press, The Bare Bones, I am now making available a PDF of the first chapter. I think this will give you a feel for the tone of the book.

Thanks to everyone for all of the interest and enthusiasm for the book. It was truly a labor of love, and I hope many of you will find it enjoyable to read and useful to those who may use it as an educational resource.

The Bare Bones, Chapter 1

I am also giving another sneak preview at one of the figures, this one from Chapter 2:

Carnivorous mammals, such as a cat, tend to have a jaw joint in line with their sharp, shearing teeth, much as the handles of a pair of scissors align with the blades.  This puts the best cutting surface towards the back of the jaws.  In contrast, herbivorous mammals such as horses have a jaw joint located above the tooth row, allowing their teeth to simultaneously contact one another like a nutcracker.

Carnivorous mammals, such as a cat, tend to have a jaw joint in line with their sharp, shearing teeth, much as the handles of a pair of scissors align with the blades. This puts the best cutting surface towards the back of the jaws. In contrast, herbivorous mammals such as horses have a jaw joint located above the tooth row, allowing their teeth to simultaneously contact one another like a nutcracker.

Also remember, you can preorder The Bare Bones through Indiana University Press or Amazon.

If you are into e-books, it can also be purchased as an e-book. See the Indiana University Press website for links to the appropriate retailers.

It is official: the BFF Lab has a CT scanner

It was an exciting day for the BFF Lab — we installed and operated our Animage FIDEX CT scanner for the first time!  We selected a preserved specimen of a mudpuppy salamander (Necturus) to anoint our system.  You can see the animation below of the anterior half of the salamander’s skeleton.

Why are there large gaps between the bones of the arms, you ask?  Salamanders like the mudpuppy have thick, cartilaginous joints.  Cartilage does not typically show up in X-rays, and hence the “gaps.”

The XROMM lab at Richard Stockton University is coming together piece by piece.

We are forever grateful to lab director Justine Ciraolo and our NAMS shop director William Harron for so much help in obtaining and coordinating our receipt of this equipment.  We also want to give a big shout out to Stephen Della Ratta of Animage for his help, enthusiasm, and expertise in setting up our CT scanner.  Our training on the FIDEX scanner was thorough and friendly, and all our questions were answered.  Thank you, Stephen.

Stay tuned for more exciting news in the near future …

XROMM is coming to Stockton and the BFF Lab!

This has been working its way through the pipeline for quite awhile, but I can finally, confidently announce that the Richard Stockton College of New Jersey will house the first XROMM lab specifically focused on undergraduate research and teaching!

XROMM (X-ray Reconstruction of Moving Morphology) is a state-of-the-art technique, developed at Brown University, for visualizing rapid skeletal movement in vivo in three-dimensions.  Find out more here and here.

Harry, one of the rats in our trials, walking through the X-ray beams.

Harry, one of the rats in our trials, walking through the X-ray beams.

This tremendously exciting development resulted as part of a large state grant and is part of Stockton’s growing science infrastructure.  We have a second new science building on the way that will house a beautiful new vivarium and will have a custom-built XROMM lab.

The equipment we will be receiving will include hi-speed videofluoroscopes (layman’s terms: super science cool X-ray movie cameras) and a veterinary CT-scanner.

To say this is a dream come true is probably an understatement!  What it means is that we will soon have the ability to reconstruct three-dimensional moving skeletons of vertebrates for research that directly involves undergraduates.  Stay tuned to this blog and the BFF lab, and we’ll keep you posted on this exciting new development for our students and college.  My co-conspirator (eh, collaborator) Jason Shulman and I are ecstatic.

In the meantime, there are many, many people to thank.  First, Beth Brainerd, Stephen Gatesy, and the other XROMM gurus at Brown University granted me the opportunity to learn this technique through their NSF-sponsored short course.  Among the many people who have helped me understand and develop my familiarity with XROMM are David Baier and Ariel Camp, who have answered a myriad of questions.  Beth Brainerd was instrumental in this process from helping me capture my first data for analysis with Stockton undergraduate Radha Varadharajan to her generous time and assistance in understanding the specs of such a lab.  Thank you, Beth!  Angela Horner (now at California State University San Bernardino) was also instrumental in collecting our initial rat data at Brown and helping us understand how rats “tick.”

For both Jason and I, we are grateful for the on-going support and encouragement of our peers and staff at Stockton.  During the past two years, lab director Justine Ciraolo and safety officer Bob Chitren have been incredibly helpful and encouraging, and it would have been impossible to get this done without their help.  Jason and I are grateful for the support of the school of Natural Sciences and Mathematics (NAMS), to Dean Weiss, to Provost Kesselman, and President Saatkamp for supporting cutting-edge science at our college.  We are also thankful for the support and encouragement we have received from our programs, Biology and Physics, and from the generous support of the Provost and Grants Office for internal grants that have placed us in this exciting position.

We must make a special mention of John Rokita and the animal lab staff for keeping our animals happy and healthy, and the Institutional Animal Care and Usage Committee (IACUC) here at Stockton for overseeing our animal research.  Again, the NAMS laboratory staff are to be thanked for all of their continuing help in making such exciting STEM experiences possible for our students.

Finally, Jason and I are delighted that we can bring this caliber of research to our students at Stockton.  It will allow us to expand on our locomotion research using optical tracking, and give students pursuing a wide range of careers in the sciences a rare opportunity to learn about the living skeleton in action.  Most importantly, the XROMM lab will expand Stockton’s already strong history of producing New Jersey STEM majors.

We will blog and tweet about the progress of the XROMM lab setup and keep you informed about how it is all coming together over the next several months.  Stay tuned!

The BFF Lab Students and Faculty in the Spotlight!

Black Beard the Bearded dragon,

Black Beard the Bearded dragon. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

I am excited to report that the Best Feet Forward (BFF) Lab has had its first local news story! Susan Allen at the Office of News & Media Relations at Stockton College has written a wonderful article that was distributed to the associated press today.  We thank Susan for this wonderful story, which we reproduce here in this post (see below).  All photos are copyright Susan Allen / The Richard Stockton College of New Jersey.

——

Stockton College Researchers Analyze Locomotion of Modern Day Reptiles, Mammals to Understand How Dinosaurs Moved

By Susan Allen, Office of News & Media Relations, Richard Stockton College of New Jersey

Galloway Township, NJ- Caleb Bayewu, a junior Biochemistry major, cradled a bearded dragon in his hands as Cory Barnes, a senior Biology major, attached tiny reflective beads to the bumpy skin on the patient reptile’s forearm.

Caleb Bayewu, a junior Biochemistry major (left), cradled a bearded dragon in his hands as Cory Barnes (right), a senior Biology major, attached tiny reflective beads to the bumpy skin on the patient reptile’s forearm.

Caleb Bayewu, a junior Biochemistry major (left), cradled a bearded dragon in his hands as Cory Barnes (right), a senior Biology major, attached tiny reflective beads to the bumpy skin on the patient reptile’s forearm. Photo (c) Susan Allen / The Richard Stockton College of New Jersey

Black Beard, as the lizard is nicknamed, is one of three juvenile bearded dragons at The Richard Stockton College of New Jersey taking part in an animal locomotion research project aimed at better understanding how dinosaurs once moved across our planet.

After body measurements were recorded, Black Beard was placed on a treadmill surrounded by a system of three infrared cameras and plastic containers that serve as safety nets in case a reptile runner strays off course.

As soon as Bayewu shook a clear jar of jumping crickets, Black Beard sprang into action. Alex Lauffer, a junior Biology major, flipped the conveyor belt switch, the treadmill kicked on and the cameras began transmitting data to Dr. Matthew Bonnan, associate professor of Biology, and Dr. Jason Shulman, assistant professor of Physics.

Caleb Bayewu, a junior Biochemistry major from Maywood in Bergen County, shakes a jar of jumping crickets to motivate a beaded dragon to run on the treadmill. From the left, Alex Hilbmann, a sophomore Biology major from West Deptford in Gloucester County, Alex Hilbmann, a sophomore Biology major from West Deptford in Gloucester County, and Corey Barnes, a senior Biology major from Seaville in Cape May County, stand by.

Caleb Bayewu, a junior Biochemistry major from Maywood in Bergen County, shakes a jar of jumping crickets to motivate a beaded dragon to run on the treadmill. From the left, Alex Hilbmann, a sophomore Biology major from West Deptford in Gloucester County, Alex Hilbmann, a sophomore Biology major from West Deptford in Gloucester County, and Corey Barnes, a senior Biology major from Seaville in Cape May County, stand by.  Photo (c) Susan Allen / The Richard Stockton College of New Jersey

Sophomore Biology majors Kieran Tracey and Alex Hilbmann stood close by, making sure Black Beard stayed on the treadmill.

Kieran Tracey, a sophomore Biology major from Sea Isle City in Cape May County, guides a beaded dragon to the treadmill as Caleb Bayewu, a junior Biochemistry major from Maywood in Bergen County, holds a jar of crickets. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

Kieran Tracey, a sophomore Biology major from Sea Isle City in Cape May County, guides a beaded dragon to the treadmill as Caleb Bayewu, a junior Biochemistry major from Maywood in Bergen County, holds a jar of crickets. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

While Black Beard ran in place, the cameras captured the motion of each reflective bead sending real experimental data at the overwhelming rate of 120 frames-per-second to a computer program that can read and display the data as moving dots.

From behind their monitor, Bonnan, of Hammonton, and Shulman, of Egg Harbor Township, watched each step on their screen.

Dr. Matthew Bonnan, associate professor of Biology, and Dr. Jason Shulman, assistant professor of Physics, are working together with students to model dinosaur movement by studying modern day reptiles and mammals. “Given that the earliest mammals and dinosaurs had a forelimb posture not unlike lizards, they are acting as a model to test hypotheses about the transition from sprawling to upright forelimb postures,” said Bonnan. Shulman has been instrumental in analyzing the data, which is captured at 120 frames-per-second by a system of infrared cameras. “He is a big part of why we're able to do this. Without him, interpreting the data would be difficult at best,” said Bonnan. (c) Photo: Susan Allen/ The Richard Stockton College of New Jersey

Dr. Matthew Bonnan, associate professor of Biology, and Dr. Jason Shulman, assistant professor of Physics, are working together with students to model dinosaur movement by studying modern day reptiles and mammals. “Given that the earliest mammals and dinosaurs had a forelimb posture not unlike lizards, they are acting as a model to test hypotheses about the transition from sprawling to upright forelimb postures,” said Bonnan. Shulman has been instrumental in analyzing the data, which is captured at 120 frames-per-second by a system of infrared cameras. “He is a big part of why we’re able to do this. Without him, interpreting the data would be difficult at best,” said Bonnan. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

Stepping Back in Time

“Without a time machine, we can’t put dinosaurs on a treadmill,” said Bonnan, who has been fascinated with dinosaurs since he was 5 years old. Instead, bearded dragons, ferrets, rats and a Savannah monitor are “standing in for their ancestors” at the Best Foot Forward (BFF) Laboratory on the main Galloway, NJ campus.

Bridget Kuhlman, a senior Biology major, of Little Egg Harbor in Ocean County, left, and Kelsey Gamble, a senior Anthropology and Biology major, of Williamstown in Gloucester County, were in the Best Foot Forward Laboratory to gather data on ferret movement patterns. Kuhlman, said, “It’s a dream come true being able to work with ferrets. It’s getting me ready for vet school,” she said. She works as an EMT and personally owns five ferrets. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

Bridget Kuhlman (left), a senior Biology major, of Little Egg Harbor in Ocean County, left, and Kelsey Gamble (right), a senior Anthropology and Biology major, of Williamstown in Gloucester County, were in the Best Foot Forward Laboratory to gather data on ferret movement patterns. Kuhlman, said, “It’s a dream come true being able to work with ferrets. It’s getting me ready for vet school,” she said. She works as an EMT and personally owns five ferrets. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

“Given that the earliest mammals and dinosaurs had a forelimb posture not unlike lizards, they are acting as a model to test hypotheses about the transition from sprawling to upright forelimb postures,” said Bonnan.

The fossil record offers scientists a motionless slice of history. Bonnan and his team have turned to optical tracking technology to tell more of the story.

“Our ultimate goal is to realistically model and place constraints on how fossil vertebrates, such as dinosaurs and early mammals, moved their forelimbs,” Bonnan explained.

The team is quantitatively illustrating the motion of modern day reptiles and mammals and using bone shape as a common denominator to make comparisons between their laboratory stand-ins and dinosaurs.

Bonnan’s lifelong desire has been to “reconstruct long-dead animals and breathe life into old bones.”

Step-by-step, his vision is coming to life with the support of colleagues, student researchers and staff within the School of Natural Sciences and Mathematics.

Blending Physics and Biology

To model motion, math and physics come into play. Bonnan’s friend and colleague, Dr. Jason Shulman, joined the team lending his numerical analysis expertise. “Jason Shulman is a big part of why we’re able to do this. Without him, interpreting the data would be difficult at best,” said Bonnan.

Early in the Physics curriculum, students learn to calculate angles and speed, which means that undergraduates are prepared to take part in real research outside of textbook exercises Shulman said.

Sometimes Physics majors wonder why they need to study Biology and vice versa. The animal locomotion research is an example of how the sciences work together. “It’s important for students to understand concepts outside of their field—that’s an important lesson I hope we convey.

The interdisciplinary collaboration is perfect for Physics students,” said Shulman.

Campus-wide Support

The bearded dragons were donated to Bonnan by student Kiersten Stukowski, of Gloucester in Camden County. Scientists rarely have the opportunity to work on a long-term project with the same specimens as they mature explained Bonnan.

Justine Ciraolo, director of Academic Laboratories and Field Facilities, connected Bonnan with her sister, who is loaning her ferrets to the team.

One of our ferrets, "Mocha."

One of our ferrets, “Mocha.” Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

When the reptiles and mammals aren’t in the lab, they are cared for by John Rokita, principal animal health lab technician, who has been instrumental in acquiring specimens for Bonnan.

“None of this would have been possible without the support of the School of Natural Sciences and Mathematics and Stockton’s Institutional Animal Care and Usage Committee. It is rare for undergraduates to get this experience. On every level this is teamwork and everyone has been incredibly helpful,” said Bonnan.

The Student Researchers

Alex Hilbmann, a sophomore Biology major, of West Deptford in Gloucester County, says he’s learned all about lizards while building a foundation to better understand the kinematics (or science of motion) during his independent study. “It wasn’t always easy to get them to run,” he admitted. Hilbmann plans to go on to medical school after Stockton.

Caleb Bayewu, a junior Biochemistry major who’s from Maywood in Bergen County, started out working with rats on the treadmill, but “they didn’t always want to move.” Since he joined the team, he’s witnessed the differences in movement among different species.

Corey Barnes, a senior Biology major, of Seaville in Cape May County, took Comparative Anatomy with Dr. Bonnan, which he says opened up his interest along the evolutionary tree. The research has really illustrated “how different their walking habits are.” Barnes is a veterinary technician at Beach Buddies Animal Hospital in Marmora and hopes to attend veterinary school.

Alex Lauffer, a junior Biology major, of Point Pleasant in Ocean County, has always had an interest in dinosaurs and reptiles. The research project was “right up my alley,” he said. The aspiring veterinary assistant has three snakes, one tarantula, one dog and a pond of koi fish. However, it was in the BFF Lab that he held his first bearded dragon. They are surprisingly calm, he said.

Kieran Tracey, a sophomore Biology major, of Sea Isle City in Cape May County, said, “I’m having a lot of fun working with lizards and watching them run,” and added that the experience is giving him important exposure to research in preparation for medical school. He looks forward to “analyzing how [the data] relates to dinosaurs.”

Bridget Kuhlman, a senior Biology major, of Little Egg Harbor in Ocean County, said, “It’s a dream come true being able to work with ferrets. It’s getting me ready for vet school,” she said. She works as an EMT and personally owns five ferrets.

Bridget Kuhlman (left) and Kelsey Gamble (right) attach tracking beads to the ferret nick-named, "Mocha" as Drs. Bonnan and Shulman look on.

Bridget Kuhlman (left) and Kelsey Gamble (right) attach tracking beads to the ferret nick-named, “Mocha” as Drs. Bonnan and Shulman look on. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

Kelsey Gamble, a senior Anthropology and Biology major, of Williamstown in Gloucester County, said, “Working with live animals is an interesting experience. It’s a lot different than my anthropology work,” she said. “We are looking at the forelimbs and how they move.” The search for patterns and constructing relationships between form and function blend her Biology and Anthropology interests.

Kelsey Gamble, a senior Anthropology and Biology major, of Williamstown in Gloucester County, said, “Working with live animals is an interesting experience. It’s a lot different than my anthropology work,” she said. “We are looking at the forelimbs and how they move.” The search for patterns and constructing relationships between form and function blend her Biology and Anthropology interests. Pictured, she holds a ferret that is taking part in the animal locomotion research project at Stockton College. Photo (c)

Kelsey Gamble, a senior Anthropology and Biology major, of Williamstown in Gloucester County, said, “Working with live animals is an interesting experience. It’s a lot different than my anthropology work,” she said. “We are looking at the forelimbs and how they move.” The search for patterns and constructing relationships between form and function blend her Biology and Anthropology interests. Pictured, she holds a ferret that is taking part in the animal locomotion research project at Stockton College. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

Contact:         Susan Allen
                        Office of News & Media Relations
                        Galloway Township, NJ 08205
                        Susan.Allen@stockton.edu
                        (609) 652-4790

Dr. Bonnan to give free dinosaur presentations at Southern New Jersey libraries

A short post to let all interested New Jersey parents and their children know that I will be giving a series of free dinosaur presentations at libraries throughout Atlantic County this July, 2014!  My presentations consist of fossils, bones, and dinosaur artwork featuring dinosaurs selected by audience members!

Check out the attached PDF link and poster below, and see when I’m coming to a library near you!

Atlantic County Library Presentations PDF Schedule 2014

Bonnan_Dinosaurs_July 2014

The NAMS Research Symposium Winners

Just a short post to make you aware that the winners of the 2014 NAMS Research Symposium are now posted on-line.

A big series of “thank you”s is necessary.  On behalf of Tara Luke and myself, we thank each and every one of our faculty and students for such an amazing turn-out at the NAMS Research Symposium this spring!  Thanks go out to all of the NAMS staff for their help with our student research. I also want to thank the judges for their time and input:  Adam Aguiar, David Burleigh, Justine Ciraolo, Nate Hartman, Marie Jelinski, and Chrissy Schairer.  We also want to again extend our thanks to David Dimmerman and his staff for coordinating the poster printing.  Finally, we thank Dean Weiss, Provost Kesselman, and President Saatkamp for their continuing support of our student research.

The Richard Stockton College of New Jersey NAMS Research Symposium Abstracts Now On-line

The 2013 NAMS Research Symposium was very well attended, with over 40 posters and many more students and faculty.

The 2013 NAMS Research Symposium was very well attended, with over 40 posters and many more students and faculty.

This is a short post to announce that the NAMS Research Symposium abstracts are now on-line in HTML format as well as available in PDF format: NAMS Symposium 2014 -Abstract Book-.  We have 55 posters this year!

Find out more by going to the NAMS Symposium Research page.  We hope you can join us this Friday, April 25.

Combining physics and vertebrate paleontology

Often, students in biology and paleontology wonder why it is that we “force” them to take physics.  I ought to know — I was one of those students!  It wasn’t until later in graduate school that I began to appreciate the application of physics to matters of dinosaur movement.  I believe part of this reticence among many future biologists and paleontologists to embrace and understand physics is that they feel (as I once did) that it was mostly the arena of engineers and cosmologists.

Yet, the questions we are often so interested in about living organisms and those in the fossil record relate to physics.  How did they move?  Were they moving in water?  How could their heart pump blood to their head?  How did a giant sauropod move, let alone stand, without breaking its bones?  So, if you are interested in dinosaurs and other magnificent animals of the past in the context of how they went about their daily lives, then you are interested in physics.

When I first began teaching vertebrate paleontology back in 2003, my goal then as now was to communicate to biology and paleontology students how modern vertebrate skeletons and body form are related to their function.  Too often, in my opinion, we tend to emphasize taxonomy and relationships over how, as scientists, we reconstruct paleobiology.  To be clear, taxonomy and the study of evolutionary relationships (systematics) are hugely important — they provide the context in which we test evolutionary hypotheses.  However, I wanted to strike a balance in my courses of teaching how the vertebrates were related in combination with how they lived their lives and responded to the physical world.

Today in my vertebrate paleontology course at Richard Stockton College, I hope a new group of students has begun to appreciate this intersection among biology, paleontology, and physics.  In the lab, students used a small wind tunnel and “smoke” from a fog machine to test how three different fossil fishes may have moved through the water.  I have found it is one thing to talk about Bernoulli’s Principle or discuss friction and pressure drag.  It is a whole other kettle of fish (pun intended) to see for one’s self how body shape actually changes the fluid around it.

Each group of students was assigned a fossil fish to research and model out of clay in lab.  Then, after hypothesizing how they thought their particular fish would behave relative to the water current (or in this case, the air current with “smoke”), they put their models in the wind tunnel, turned on the smoke, and put their hypotheses to the test.  They will later present their findings to the class.  My hope in all of this is that these students appreciate that our hypotheses about past life rely heavily on our models of the present flesh, bone, and physical laws.

Student group modeling and studying the effect of body shape on fluid movement in the early chondrichthyan, _Cladoselache_.

Student group modeling and studying the effect of body shape on fluid movement in the early chondrichthyan, _Cladoselache_.  Our wind tunnel can be seen in the background, upper left.

The _Cladoselache_ model sculpted by students based on data from fossils.

The _Cladoselache_ model sculpted by students based on data from fossils.

The student group studying the heterostracan (jawless fish) _Drepanaspis_.

The student group studying the heterostracan (jawless fish) _Drepanaspis_.

_Drepanaspis_ model.

_Drepanaspis_ model.

The student group studying the osteostracan (jawless fish), _Hemicyclaspis_.

The student group studying the osteostracan (jawless fish), _Hemicyclaspis_.

The _Hemicyclaspis_ model.

The _Hemicyclaspis_ model.

The _Hemicyclaspis_ model in our wind tunnel, sitting on a box of clay to prop it into the (faintly visible) stream of "smoke."

The _Hemicyclaspis_ model in our wind tunnel, sitting on a box of clay to prop it into the (faintly visible) stream of “smoke.”

I want to dedicate this short post to the following people at Richard Stockton College.  First, having a wind tunnel and smoke machine would not have happened at all were it not for the help of our shop staff in the Natural Sciences — Bill Harron, Mike Farrell, and Mike Santoro.  They worked on this small scale wind tunnel with my input, and helped give our students a wonderful lab experience.

Second, Christine Shairer was invaluable for her help with getting me the materials my students and I needed to do this small-scale experiment.

Finally, third, Dr. Jason Shulman in physics who is a colleague, research collaborator, and one of the few physicists willing to put up with a paleontologist who is constantly asking what I can only assume are ignorant and humorously simple questions.  If only I had had such an enthusiastic professor when I was questioning why I had to learn physics all those years ago!

What lies beneath the cartilage just might help you become a giant dinosaur

Figure 7 from our PLOS ONE paper -- This figure conveys the essence of our conclusions: as mammals become giants, their joints become ever more congruent with thinning articular cartilage.  For dinosaurs, the cartilage remains thick and the joint region expands.

You can read the paper for free by clicking here.

As I recently learned from a fall in which I broke one of my ribs, gravity is an irresistible force.

My poor broken rib.

My poor broken rib.

Gravity’s relentless pull has shaped the evolution of the skeleton in land vertebrates who have had to stand tall or be crushed.  Trees have it easy in that they only have to stand and sway (Vogel, 2003) – our skeletons have to resist gravity while on the move (McGowan, 1999; Carter and Beaupré, 2001).  If force equals mass times acceleration, then every time you walk, jog, or climb a flight of stairs, you are pummeling your limb skeleton with forces greater than your body weight!  But your bones are alive and they adapt to this daily abuse by changing their shapes to best resist those forces.  Therefore, paleontologists, like my colleagues and I, are obsessed with bone shape because it is a proxy record of how the limb skeleton adapted to support and move a fossil animal like a dinosaur.  Until we recreate living dinosaurs ala Jurassic Park, limb shape is the next best thing to putting a dinosaur or mastodon on a treadmill.

Many dinosaurs were successful in becoming land giants, whereas a comparative handful of land mammals have ever crossed the 1,000 kg mark (Farlow et al., 1995, 2010; Prothero and Schoch, 2002; Prothero, 2013).

The average dinosaur (excluding birds) weighed in at over 1 ton, whereas the average land mammal barely tips the scales at 1 kilogram. (c) 2013 M.F. Bonnan.

The average dinosaur (excluding birds) weighed in at over 1 ton, whereas the average land mammal barely tips the scales at 1 kilogram. (c) 2013 M.F. Bonnan.

Therefore, you might predict to see stark differences in limb skeleton shape between dinosaurs and land mammals … and yet you don’t!  In fact, getting big on land as a dinosaur or mammal usually results in stout columnar limb bones which resist weight combined with a decrease in activities like running or jumping (Christiansen, 1997, 2007; Carrano, 2001; Biewener, 2005; Bonnan, 2007).  In essence, you get an interesting but ultimately boring pattern that shows us there are only so many solutions to fighting gravity.

In a recently published open-access, peer-reviewed article in PLOS ONE, my colleagues and I have shown that there is one area of a limb bone that does change in different ways with increasing size between land mammals and dinosaurs: the joint-bearing region.

By Bonnan after Carter & Beaupre (2001) and Holliday et al. (2010).

Dinosaurs share the primitive tetrapod condition of retaining thick cartilaginous joints.  Diagram by Bonnan after Carter & Beaupre (2001) and Holliday et al. (2010).

Called the sub-articular surface, this zone supports the slippery and pliable articular cartilage that makes movement possible at joints by decreasing friction and absorbing stress.  We focused on this region because: 1) its shape should reflect how the bone beneath the cartilage was reacting to stress; and 2) recent work has shown that articular cartilage thickness in dinosaurs and land mammals differs, being very thick (several centimeters in some cases) in the former and very thin (only a few millimeters) in the latter (Graf et al., 1993; Egger et al., 2008; Bonnan et al., 2010; Holliday et al., 2010; Malda et al., 2013).

What we found surprised us.  As land mammals become giants, their sub-articular regions become narrow with well-defined surface features.  In contrast, becoming a giant sauropod involves an increase in the sub-articular region combined with a subdued, gently convex profile.

Figure 3 from our PLOS ONE paper -- On the X-axis, the sub-articular bone region narrows significantly with increasing size, and the shapes of these regions become more convex and/or distinct.

Figure 3 from our PLOS ONE paper — On the X-axis, the sub-articular bone region narrows significantly with increasing size, and the shapes of these regions become more convex and/or distinct.

Figure 5 of our PLOS ONE paper -- .  In particular, the sub-articular region expands tremendously whereas its overall shape remains gently convex.

Figure 5 of our PLOS ONE paper — . Along the X-axis, the sub-articular region of the humerus expands tremendously whereas its overall shape remains gently convex.

Why this difference?  Our results suggest two interrelated relationships.  First, sub-articular bone profile and cartilage thickness go hand-in-hand.  In living animals, those with thick articular cartilage (alligators and guinea fowl birds in our sample) have expanded sub-articular regions with gentle convexity, whereas those with thin articular cartilage (the living mammals in our sample) retain narrow and increasingly well-defined sub-articular regions.  Hence, seeing the narrow and well-developed sub-articular regions in fossil elephants and Paraceratherium show convincingly that they had very thin articular cartilage.  In contrast, the expanded and gently convex ends of the limb bones in sauropods appear to be well-correlated with thick articular cartilage.

Second, and more intriguing, these differences suggest different adaptations to becoming a giant constrained by cartilage thickness.  In mammals, it has been well-documented that the best way to disperse stress through thin cartilage is to increase the surface contact area (Simon et al., 1973; Egger et al., 2008).  In other words, mammals spread the load by narrowing their joints and increasing surface complexity, allowing the bones to articulate closely.  As we say in the paper, becoming a giant mammal means developing highly congruent joints.  In contrast, becoming a giant sauropod dinosaur involves retaining thick articular cartilage that presumably deforms under pressure.  This would go a long way to explaining the expanded sub-articular surfaces we see in sauropods: deforming a thick block of cartilage safely likely requires enough space over which to spread the load.

What does this all have to do with the frequency of gigantism?  We speculate that articular cartilage thickness may have a limiting effect on size.  If in mammals the best way to spread stress through a joint is by thinning the cartilage and increasing congruence, you are going to get to a point where the joints are as congruent as possible and the cartilage cannot get any thinner.  In contrast, retaining thick articular cartilage at large size might have been one factor that contributed to the frequent evolution of so many dinosaur giants.  Therefore, our data suggest that the rarity of large land mammals may be due, in part, to their highly congruent limb joints with thin articular cartilage, whereas the success of sauropod dinosaurs as giants may be tied, in part, to their retention of thick articular cartilage.

Figure 7 from our PLOS ONE paper -- This figure conveys the essence of our conclusions: as mammals become giants, their joints become ever more congruent with thinning articular cartilage.  For dinosaurs, the cartilage remains thick and the joint region expands.

Figure 7 from our PLOS ONE paper — This figure conveys the essence of our conclusions: as mammals become giants, their joints become ever more congruent with thinning articular cartilage. For dinosaurs, the cartilage remains thick and the joint region expands.

As we say in the article, we in no way intend this to be the last word on dinosaur gigantism or imply that this was the only explanation for their success as land giants.  In fact, we hope our work, which was limited to 2-D profiles of the sub-articular surfaces, will be expanded upon using newer, 3-D technology by future researchers (see for example recent work by Tsai and Holliday [2012]).  So the next time you take a walk, think about and appreciate how a narrow slice of cartilage helps ensure your bones glide past one another and don’t smack together.  I only wish thick, pliable cartilage was in my poor rib, which deformed and snapped under stresses far, far less than those which pummeled the limbs of giant mammals and dinosaurs.

My poor broken rib revisited.

My poor broken rib revisited.

You can read the paper, for free, here.

My Co-authors

This study would not have been published without the help and perseverance of my co-authors.

RayWRay Wilhite is a kindred sauropod spirit, and an associate professor of veterinary anatomy at Auburn College who knows far more about alligator anatomy than I can ever hope to amass.  His assistance in helping me twice procure, dissect, and prepare alligators from the Louisiana Rockefeller Wildlife Refuge was invaluable.  He also introduced me to Ruth Elsey, the goddess of alligators, whom ended up as an author on one of our previous forays into the relationship between cartilage thickness and shape (Bonnan et al., 2010).

Ray comments on our paper: “For most of the history of vertebrate paleontology scientists and explorers focused on finding new fossils and organizing them into meaningful taxonomic groups.  Recently, however, many paleontologists have shifted their focus to trying to understand the biology and functional morphology of extinct species.  I believe our study has moved the discussion forward regarding the morphological adaptations of sauropods that allowed the to grow to such gigantic proportions.  Our study provides a possible clue about why sauropod humeri and femora have expanded ends and large terrestrial mammals do not.  The revelation in recent years that there is most likely a significant portion of the articular surface missing in preserved sauropod limb bones is supported by this study.  Slowly but surely we are beginning to not just put flesh on the bones, but put the bones on the bones and see what lay between.”

Simon L. Masters was a former graduate student of mine, and his thesis on the ontogeny of the forelimb in Allosaurus was to SimonMform the basis of the theropod dinosaur set in our paper.  Simon, along with Jim Farlow, previously helped with the writing and analysis of using shape-based statistics for determining sex from the alligator femur (Bonnan et al., 2008).  Simon has done well for himself and I’m happy to say he is inspiring a new crop of STEM students as a high school teacher at the all-girls Beaumont School in Cleveland Heights, Ohio.

AdamYAdam M. Yates has been an invaluable friend and colleague, and his contribution to this paper allowed us to compile a great deal of morphometric data on “prosauropods.”  More specifically, when he, Johann Neveling, and I were working up a different paper on what would become our new dinosaur, Arcusaurus (Yates et al., 2011), I began running morphometric analyses of the distal ends of dinosaur and archosaur humeri because we had only the distal end of that animal’s humerus.  That figure never made the final paper but it was my first hint that something interesting was going on in dinosaurs: as I plotted “prosauropod” and sauropod humeri, I could see that there was this trend towards expansion and slight convexity.  I wanted to note that in our Arcusaurus paper, but Adam encouraged me to save the data for a later time … and that time is now.

ChristineGChristine Gardner was one of my many successful undergraduate honors students.  While working with me, she measured nearly all of the Afrotherian mammals in our paper for her undergraduate thesis on long bone scaling in these mammals.  Her hard work at collecting and analyzing her dataset not only gave her honors in finishing her undergraduate work, but contributed in a substantial way to our paper.  She has also journeyed with me out to the field a number of times, and has successfully landed herself in the graduate program at the South Dakota School of Mines.

Christine had this to say about our study: “It was the summer between my junior and senior years when I officially began my undergraduate thesis project. Obviously a new experience for me, I didn’t entirely know what to expect. Little did I know I’d watch my raw data not only yield my honors thesis, but eventually become part of much bigger research which has ended with my name being published. Not many students get to share this privilege before finishing their Master’s thesis.”

AdamAAdam Aguiar is one of my new colleagues at the Richard Stockton College of New Jersey who specializes is understanding the molecular-level details of bone and cartilage biology.  After the first draft of the paper, he was invaluable at providing insight into thinking about articular cartilage and its responses to shock and stress.  This gave the paper a new lease on life, and I doubt we would have been successful on our next submission had it not been for his encouragement and contribution.

Acknowledgments

We thank the many institutions and individuals that provided us with access to specimens for this study.  I cannot possibly list all of them here: much of the archosaur data was collected for previous studies (Bonnan, 2004, 2007; Bonnan et al., 2008, 2010)  and the heartfelt thanks and appreciation expressed in those references continues more strongly than ever here.  For the present study, we wish to thank the following institutions and staff: AMNH: N. B. Simmons and staff (Mammalogy), J. Meng, J. Galkin, and staff (Fossil Mammals); FMNH: W. Stanley and staff (Mammalogy), K. D. Angielczyk, W. Simpson, and staff (Fossil Mammals); UNMH: R. Irmis, M. Getty, and staff; CLQ: M. Leschin; SAM: A. Chinsamy-Turan and staff; BPI: B. Rubidge and staff.  We thank Kimberley Schuenman at WIU for collecting data on felids used in this study.  Feedback from Gregory S. Paul, Henry Tsai, and Stephen Gatesy at the 2012 Society of Vertebrate Paleontology meeting further improved our manuscript.  Discussions with Jason Shulman at the Richard Stockton College of New Jersey on static physics were helpful.  Donald Henderson and an anonymous reviewer provided useful comments, critiques, and suggestions on a first draft of this manuscript.  We are also indebted to PLOS ONE editor Peter Dodson for shepherding our manuscript through the PLoS system, and his feedback, comments, and suggestions.

Last but not least – a great big thank you to my new employer, the Richard Stockton College of New Jersey, for helping with publication costs!  Thank you Stockton and the Grants Office, particularly Beth Olsen!

 An Important Aside on Methods and Why We Did What We Did

  • We chose to focus on evolutionary lines of mammals and dinosaurs that gave rise to the very largest land species.  For mammals, we focused on the placental (eutherian) lines called Afrotheria and Laurasiatheria because elephants and Paraceratherium, the giant rhino relative, descended from these.  For dinosaurs, we focused on the Saurischians because the giant, long-necked “brontosaurs” called sauropods were members. We also selected smaller-bodied relatives of these giants in their family trees to examine how similar or different the sub-articular zones of these giants were to their smaller relatives.  To analyze shape, we used a computer program called Thin-Plate Splines that tracks and compares landmark coordinates on bones.
  • Because bony landmarks and sub-articular surfaces were not always anatomically homologous between archosaurs and mammals, we avoided issues of mixing non-homologous areas in our data by running the analyses on these two groups separately.
  • Why did we use a two-dimensional analysis instead of a three-dimensional analysis?  Undoubtedly, three-dimensional shape analysis would have further enhanced our interpretation of sub-articular shape patterns.  However, a number of challenges prevented such an approach:
    • First and most significantly, the data collected in this study span a period of over 10 years during which time cost-effective and portable three-dimensional scanning technologies for acquiring large bone geometries have only recently started to become available.  Had we access to these technologies ten years prior, we would have utilized them, as we plan to utilize such approaches in future studies.
    • Second, our main goal in this study was to quantify whether or not there were significant differences in the scaling patterns of surface morphology between eutherian mammal and saurischian dinosaur long bones, and whether such differences were correlated with known differences in articular cartilage properties.  We emphasize that our goal was not to realistically recreate joint surfaces or establish precise measures of joint articulation, nor do we propose how the three-dimensional shape of the subchondral bone is used to reconstruct joint geometry.  Our selection of the humerus and femur furthers our goal: these are long bones in which a significant portion of the subarticular surfaces can be reliably captured and interpreted in two dimensions.
    • Finally, third, two-dimensional data is valuable, comparable to previous studies, and provides a good first-level approximation of scaling patterns.  Just as linear morphometrics informed and directed the study of two-dimensional geometric morphometrics (GM) of long bones, so, too, can two-dimensional GM illuminate where future three-dimensional GM studies can make the best impact.  Our study is certainly not the last word on long-bone scaling and subarticular patterns in non-avian dinosaurs.  Rather, we hope it inspires and provides the basis for research incorporating three-dimensional technologies in years to come.

References

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Bonnan, M. F. 2004. Morphometric analysis of humerus and femur shape in Morrison sauropods: implications for functional morphology and paleobiology. Paleobiology 30:444–470.

Bonnan, M. F. 2007. Linear and geometric morphometric analysis of long bone scaling patterns in Jurassic neosauropod dinosaurs: their functional and paleobiological implications. Anatomical Record (Hoboken, N.J. : 2007) 290:1089–111.

Bonnan, M. F., J. O. Farlow, and S. L. Masters. 2008. Using linear and geometric morphometrics to detect intraspecific variability and sexual dimorphism in femoral shape in Alligator mississippiensis and its implications for sexing fossil archosaurs. Journal of Vertebrate Paleontology 28:422–431.

Bonnan, M. F., J. L. Sandrik, T. Nishiwaki, D. R. Wilhite, R. M. Elsey, and C. Vittore. 2010. Calcified cartilage shape in archosaur long bones reflects overlying joint shape in stress-bearing elements: Implications for nonavian dinosaur locomotion. Anatomical Record (Hoboken, N.J. : 2007) 293:2044–55.

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Carter, D. R., and G. S. Beaupré. 2001. Skeletal Function and Form : Mechanobiology of Skeletal Development, Aging, and Regeneration. Cambridge University Press, Cambridge; New York, pp.

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Christiansen, P. 2007. Long bone geometry in columnar-limbed animals: allometry of the proboscidean appendicular skeleton. Zoological Journal of the Linnean Society 149:423–436.

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Farlow, J., P. Dodson, and A. Chinsamy. 1995. Dinosaur biology. Annual Review of Ecology and \ldots 193:44.

Farlow, J., I. D. Coroian, and J. Foster. 2010. Giants on the landscape: modelling the abundance of megaherbivorous dinosaurs of the Morrison Formation (Late Jurassic, western USA). Historical Biology 22:403–429.

Graf, J., E. Stofft, U. Freese, and F. U. Niethard. 1993. The ultrastructure of articular cartilage of the chicken’s knee joint. Internationl Orthopaedics (SICOT) 17:113–119.

Holliday, C. M., R. C. Ridgely, J. C. Sedlmayr, and L. M. Witmer. 2010. Cartilaginous Epiphyses in Extant Archosaurs and Their Implications for Reconstructing Limb Function in Dinosaurs. PLoS ONE 5:e13120.

Malda, J., J. C. de Grauw, K. E. M. Benders, M. J. L. Kik, C. H. A. van de Lest, L. B. Creemers, W. J. A. Dhert, and P. R. van Weeren. 2013. Of Mice, Men and Elephants: The Relation between Articular Cartilage Thickness and Body Mass. PLoS ONE 8:e57683.

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Dinosaur hand and forelimb posture might have been more diverse than previously hypothesized

Turn a doorknob and you are taking advantage of what anatomists call pronation and supination: the ability to rotate your hand palm-side down (pronation) or palm-side up (supination).  This ability stems from your bone geometry: the radius bone in your forearm is curved can pivot around your ulna, rotating your hand in the process.  Drop to the floor and crawl, and your hand is pronated by crossing the radius over the ulna just as it is for mammals which walk on all-fours like elephants, dogs, and cats.

Pronation and supination of the hand by rotating the radius bone over the ulna in humans. (c) 2013 M.F. Bonnan.

Pronation and supination of the hand by rotating the radius bone over the ulna in humans. (c) 2013 M.F. Bonnan.

In our paper published this week in PLOS ONE, my former student, Collin VanBuren (now a Ph.D. fellow at the University of Cambridge, UK) and myself suggest that most dinosaurs could not actively pronate their hands (that is, turn doorknobs) because their radius could not cross their ulna. Our conclusions were reached after analyzing the bones of nearly 300 specimens representing living birds, reptiles, mammals, and dinosaurs like Tyrannosaurus, Apatosaurus, and Triceratops.

Difference in radius bone geometry are correlated to some degree with forelimb posture.

Difference in radius bone geometry are correlated to some degree with forelimb posture.

Statistical analysis of radius geometry shows that dinosaurs most often have a straight radius bone with a non-circular head (the part that allows movement at the elbow), a shape similar to those of lizards, crocodiles, and birds.  These animals cannot actively pronate their hands, and in lizards and crocodiles this radius geometry is correlated with a non-erect forelimb posture.  In contrast, most land mammals show a curved radius geometry that enables the forelimb to be held erect and the hand to be pronated.  Mammals like ourselves have a well-rounded radial head that allows the radius to actively swivel around the ulna.  Tellingly, the only mammals in our sample that resembled reptiles, birds, and dinosaurs were the primitive, sprawling egg-laying duck-billed platypus and spiny echidna.

Our findings are significant in that they show dinosaur forelimb posture was not mammal-like and, possibly most importantly, more diverse than previously appreciated.  For example, radius shape suggests the forelimb posture and range of pronation in horned dinosaurs like Triceratops was more like those of a crocodile than a rhino.  In another example, the radius geometry of the giant, long-necked sauropods such as Apatosaurus don’t comfortably group with living reptiles, birds, or mammals, suggesting that their forelimb postures were achieved in anatomically novel ways.  Ultimately, our data strongly suggest that we must re-evaluate our conceptions of how dinosaurs could and could not use their forelimbs.

We can also breathe a sigh of relief: most predatory dinosaurs could not open our doors.

I  must give a big shout out and expression of gratitude to Collin — his dedication to this project, through several starts and stops, is what finally saw it through.  That we landed this research in a venue like PLOS ONE is that much more of a testament to his perseverance to get this science out there.  It means a lot to me that we got this out and into open-access: this represents the accumulation of some of my inferences and hypotheses on dinosaur forelimb posture since my graduate school days.  I also want to acknowledge the influence and inspiration of some fellow dinosaur forelimb fanatics, namely Ray Wilhite, Phil Senter and Heinrich Mallison.  All are colleagues and friends, and all have also in their own unique ways put dinosaur forepaws front and center — I encourage you to check out their research!

Read our paper, which is open access: http://dx.plos.org/10.1371/journal.pone.0074842