Read the first chapter of The Bare Bones

BareBmecDue to requests for a sampler of my forthcoming book from Indiana University Press, The Bare Bones, I am now making available a PDF of the first chapter. I think this will give you a feel for the tone of the book.

Thanks to everyone for all of the interest and enthusiasm for the book. It was truly a labor of love, and I hope many of you will find it enjoyable to read and useful to those who may use it as an educational resource.

The Bare Bones, Chapter 1

I am also giving another sneak preview at one of the figures, this one from Chapter 2:

Carnivorous mammals, such as a cat, tend to have a jaw joint in line with their sharp, shearing teeth, much as the handles of a pair of scissors align with the blades.  This puts the best cutting surface towards the back of the jaws.  In contrast, herbivorous mammals such as horses have a jaw joint located above the tooth row, allowing their teeth to simultaneously contact one another like a nutcracker.

Carnivorous mammals, such as a cat, tend to have a jaw joint in line with their sharp, shearing teeth, much as the handles of a pair of scissors align with the blades. This puts the best cutting surface towards the back of the jaws. In contrast, herbivorous mammals such as horses have a jaw joint located above the tooth row, allowing their teeth to simultaneously contact one another like a nutcracker.

Also remember, you can preorder The Bare Bones through Indiana University Press or Amazon.

If you are into e-books, it can also be purchased as an e-book. See the Indiana University Press website for links to the appropriate retailers.

The NAMS Research Symposium at Stockton University – Friday, April 17

Just a brief announcement that the NAMS Research Symposium, which features research by NAMS students with faculty, is this Friday, April 17 in the C/D Atrium on the Main Campus of Stockton University. Students will be at their posters between 3-5PM.

You can see the research our students are doing by downloading the NAMS Research Symposium Abstract Booklet 2015.

You can tweet about the event with the hashtag #OspreySci

You can also join us on Facebook.

The BFF Lab Students and Faculty in the Spotlight!

Black Beard the Bearded dragon,

Black Beard the Bearded dragon. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

I am excited to report that the Best Feet Forward (BFF) Lab has had its first local news story! Susan Allen at the Office of News & Media Relations at Stockton College has written a wonderful article that was distributed to the associated press today.  We thank Susan for this wonderful story, which we reproduce here in this post (see below).  All photos are copyright Susan Allen / The Richard Stockton College of New Jersey.

——

Stockton College Researchers Analyze Locomotion of Modern Day Reptiles, Mammals to Understand How Dinosaurs Moved

By Susan Allen, Office of News & Media Relations, Richard Stockton College of New Jersey

Galloway Township, NJ- Caleb Bayewu, a junior Biochemistry major, cradled a bearded dragon in his hands as Cory Barnes, a senior Biology major, attached tiny reflective beads to the bumpy skin on the patient reptile’s forearm.

Caleb Bayewu, a junior Biochemistry major (left), cradled a bearded dragon in his hands as Cory Barnes (right), a senior Biology major, attached tiny reflective beads to the bumpy skin on the patient reptile’s forearm.

Caleb Bayewu, a junior Biochemistry major (left), cradled a bearded dragon in his hands as Cory Barnes (right), a senior Biology major, attached tiny reflective beads to the bumpy skin on the patient reptile’s forearm. Photo (c) Susan Allen / The Richard Stockton College of New Jersey

Black Beard, as the lizard is nicknamed, is one of three juvenile bearded dragons at The Richard Stockton College of New Jersey taking part in an animal locomotion research project aimed at better understanding how dinosaurs once moved across our planet.

After body measurements were recorded, Black Beard was placed on a treadmill surrounded by a system of three infrared cameras and plastic containers that serve as safety nets in case a reptile runner strays off course.

As soon as Bayewu shook a clear jar of jumping crickets, Black Beard sprang into action. Alex Lauffer, a junior Biology major, flipped the conveyor belt switch, the treadmill kicked on and the cameras began transmitting data to Dr. Matthew Bonnan, associate professor of Biology, and Dr. Jason Shulman, assistant professor of Physics.

Caleb Bayewu, a junior Biochemistry major from Maywood in Bergen County, shakes a jar of jumping crickets to motivate a beaded dragon to run on the treadmill. From the left, Alex Hilbmann, a sophomore Biology major from West Deptford in Gloucester County, Alex Hilbmann, a sophomore Biology major from West Deptford in Gloucester County, and Corey Barnes, a senior Biology major from Seaville in Cape May County, stand by.

Caleb Bayewu, a junior Biochemistry major from Maywood in Bergen County, shakes a jar of jumping crickets to motivate a beaded dragon to run on the treadmill. From the left, Alex Hilbmann, a sophomore Biology major from West Deptford in Gloucester County, Alex Hilbmann, a sophomore Biology major from West Deptford in Gloucester County, and Corey Barnes, a senior Biology major from Seaville in Cape May County, stand by.  Photo (c) Susan Allen / The Richard Stockton College of New Jersey

Sophomore Biology majors Kieran Tracey and Alex Hilbmann stood close by, making sure Black Beard stayed on the treadmill.

Kieran Tracey, a sophomore Biology major from Sea Isle City in Cape May County, guides a beaded dragon to the treadmill as Caleb Bayewu, a junior Biochemistry major from Maywood in Bergen County, holds a jar of crickets. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

Kieran Tracey, a sophomore Biology major from Sea Isle City in Cape May County, guides a beaded dragon to the treadmill as Caleb Bayewu, a junior Biochemistry major from Maywood in Bergen County, holds a jar of crickets. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

While Black Beard ran in place, the cameras captured the motion of each reflective bead sending real experimental data at the overwhelming rate of 120 frames-per-second to a computer program that can read and display the data as moving dots.

From behind their monitor, Bonnan, of Hammonton, and Shulman, of Egg Harbor Township, watched each step on their screen.

Dr. Matthew Bonnan, associate professor of Biology, and Dr. Jason Shulman, assistant professor of Physics, are working together with students to model dinosaur movement by studying modern day reptiles and mammals. “Given that the earliest mammals and dinosaurs had a forelimb posture not unlike lizards, they are acting as a model to test hypotheses about the transition from sprawling to upright forelimb postures,” said Bonnan. Shulman has been instrumental in analyzing the data, which is captured at 120 frames-per-second by a system of infrared cameras. “He is a big part of why we're able to do this. Without him, interpreting the data would be difficult at best,” said Bonnan. (c) Photo: Susan Allen/ The Richard Stockton College of New Jersey

Dr. Matthew Bonnan, associate professor of Biology, and Dr. Jason Shulman, assistant professor of Physics, are working together with students to model dinosaur movement by studying modern day reptiles and mammals. “Given that the earliest mammals and dinosaurs had a forelimb posture not unlike lizards, they are acting as a model to test hypotheses about the transition from sprawling to upright forelimb postures,” said Bonnan. Shulman has been instrumental in analyzing the data, which is captured at 120 frames-per-second by a system of infrared cameras. “He is a big part of why we’re able to do this. Without him, interpreting the data would be difficult at best,” said Bonnan. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

Stepping Back in Time

“Without a time machine, we can’t put dinosaurs on a treadmill,” said Bonnan, who has been fascinated with dinosaurs since he was 5 years old. Instead, bearded dragons, ferrets, rats and a Savannah monitor are “standing in for their ancestors” at the Best Foot Forward (BFF) Laboratory on the main Galloway, NJ campus.

Bridget Kuhlman, a senior Biology major, of Little Egg Harbor in Ocean County, left, and Kelsey Gamble, a senior Anthropology and Biology major, of Williamstown in Gloucester County, were in the Best Foot Forward Laboratory to gather data on ferret movement patterns. Kuhlman, said, “It’s a dream come true being able to work with ferrets. It’s getting me ready for vet school,” she said. She works as an EMT and personally owns five ferrets. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

Bridget Kuhlman (left), a senior Biology major, of Little Egg Harbor in Ocean County, left, and Kelsey Gamble (right), a senior Anthropology and Biology major, of Williamstown in Gloucester County, were in the Best Foot Forward Laboratory to gather data on ferret movement patterns. Kuhlman, said, “It’s a dream come true being able to work with ferrets. It’s getting me ready for vet school,” she said. She works as an EMT and personally owns five ferrets. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

“Given that the earliest mammals and dinosaurs had a forelimb posture not unlike lizards, they are acting as a model to test hypotheses about the transition from sprawling to upright forelimb postures,” said Bonnan.

The fossil record offers scientists a motionless slice of history. Bonnan and his team have turned to optical tracking technology to tell more of the story.

“Our ultimate goal is to realistically model and place constraints on how fossil vertebrates, such as dinosaurs and early mammals, moved their forelimbs,” Bonnan explained.

The team is quantitatively illustrating the motion of modern day reptiles and mammals and using bone shape as a common denominator to make comparisons between their laboratory stand-ins and dinosaurs.

Bonnan’s lifelong desire has been to “reconstruct long-dead animals and breathe life into old bones.”

Step-by-step, his vision is coming to life with the support of colleagues, student researchers and staff within the School of Natural Sciences and Mathematics.

Blending Physics and Biology

To model motion, math and physics come into play. Bonnan’s friend and colleague, Dr. Jason Shulman, joined the team lending his numerical analysis expertise. “Jason Shulman is a big part of why we’re able to do this. Without him, interpreting the data would be difficult at best,” said Bonnan.

Early in the Physics curriculum, students learn to calculate angles and speed, which means that undergraduates are prepared to take part in real research outside of textbook exercises Shulman said.

Sometimes Physics majors wonder why they need to study Biology and vice versa. The animal locomotion research is an example of how the sciences work together. “It’s important for students to understand concepts outside of their field—that’s an important lesson I hope we convey.

The interdisciplinary collaboration is perfect for Physics students,” said Shulman.

Campus-wide Support

The bearded dragons were donated to Bonnan by student Kiersten Stukowski, of Gloucester in Camden County. Scientists rarely have the opportunity to work on a long-term project with the same specimens as they mature explained Bonnan.

Justine Ciraolo, director of Academic Laboratories and Field Facilities, connected Bonnan with her sister, who is loaning her ferrets to the team.

One of our ferrets, "Mocha."

One of our ferrets, “Mocha.” Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

When the reptiles and mammals aren’t in the lab, they are cared for by John Rokita, principal animal health lab technician, who has been instrumental in acquiring specimens for Bonnan.

“None of this would have been possible without the support of the School of Natural Sciences and Mathematics and Stockton’s Institutional Animal Care and Usage Committee. It is rare for undergraduates to get this experience. On every level this is teamwork and everyone has been incredibly helpful,” said Bonnan.

The Student Researchers

Alex Hilbmann, a sophomore Biology major, of West Deptford in Gloucester County, says he’s learned all about lizards while building a foundation to better understand the kinematics (or science of motion) during his independent study. “It wasn’t always easy to get them to run,” he admitted. Hilbmann plans to go on to medical school after Stockton.

Caleb Bayewu, a junior Biochemistry major who’s from Maywood in Bergen County, started out working with rats on the treadmill, but “they didn’t always want to move.” Since he joined the team, he’s witnessed the differences in movement among different species.

Corey Barnes, a senior Biology major, of Seaville in Cape May County, took Comparative Anatomy with Dr. Bonnan, which he says opened up his interest along the evolutionary tree. The research has really illustrated “how different their walking habits are.” Barnes is a veterinary technician at Beach Buddies Animal Hospital in Marmora and hopes to attend veterinary school.

Alex Lauffer, a junior Biology major, of Point Pleasant in Ocean County, has always had an interest in dinosaurs and reptiles. The research project was “right up my alley,” he said. The aspiring veterinary assistant has three snakes, one tarantula, one dog and a pond of koi fish. However, it was in the BFF Lab that he held his first bearded dragon. They are surprisingly calm, he said.

Kieran Tracey, a sophomore Biology major, of Sea Isle City in Cape May County, said, “I’m having a lot of fun working with lizards and watching them run,” and added that the experience is giving him important exposure to research in preparation for medical school. He looks forward to “analyzing how [the data] relates to dinosaurs.”

Bridget Kuhlman, a senior Biology major, of Little Egg Harbor in Ocean County, said, “It’s a dream come true being able to work with ferrets. It’s getting me ready for vet school,” she said. She works as an EMT and personally owns five ferrets.

Bridget Kuhlman (left) and Kelsey Gamble (right) attach tracking beads to the ferret nick-named, "Mocha" as Drs. Bonnan and Shulman look on.

Bridget Kuhlman (left) and Kelsey Gamble (right) attach tracking beads to the ferret nick-named, “Mocha” as Drs. Bonnan and Shulman look on. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

Kelsey Gamble, a senior Anthropology and Biology major, of Williamstown in Gloucester County, said, “Working with live animals is an interesting experience. It’s a lot different than my anthropology work,” she said. “We are looking at the forelimbs and how they move.” The search for patterns and constructing relationships between form and function blend her Biology and Anthropology interests.

Kelsey Gamble, a senior Anthropology and Biology major, of Williamstown in Gloucester County, said, “Working with live animals is an interesting experience. It’s a lot different than my anthropology work,” she said. “We are looking at the forelimbs and how they move.” The search for patterns and constructing relationships between form and function blend her Biology and Anthropology interests. Pictured, she holds a ferret that is taking part in the animal locomotion research project at Stockton College. Photo (c)

Kelsey Gamble, a senior Anthropology and Biology major, of Williamstown in Gloucester County, said, “Working with live animals is an interesting experience. It’s a lot different than my anthropology work,” she said. “We are looking at the forelimbs and how they move.” The search for patterns and constructing relationships between form and function blend her Biology and Anthropology interests. Pictured, she holds a ferret that is taking part in the animal locomotion research project at Stockton College. Photo (c) Susan Allen/ The Richard Stockton College of New Jersey

Contact:         Susan Allen
                        Office of News & Media Relations
                        Galloway Township, NJ 08205
                        Susan.Allen@stockton.edu
                        (609) 652-4790

Ferret on a treadmill — you read that correctly

When you’re interested in documenting forelimb locomotion to help you infer what was going on extinct reptiles and mammals, it pays not to be picky.  So when the opportunity came to analyze the gaits of two ferrets materialized, how could the BFF lab say no?  Ferrets have a unique body morphology and certainly have a much more upright forelimb than the rats and reptiles we typically work with, so they help form a nice point of contrast and comparison.

What happens when you place a GoPro camera at the end of the treadmill?  Success, that’s what.  BFF student Bridget Kuhlman did just that the other week in our lab during our data capture sessions, and she got this brilliant bit of POV video.  You don’t see Bridget directly in the video, although you do see her finger which has a tasty smear of FerretVite which we use to coax the ferrets to walk in the line of the infrared cameras.  In the background, modulating the treadmill, is BFF student Kelsey Gamble.

You will notice that this Ferret, nick-named “Latte,” walks and then rides the treadmill backwards, then walks again.  Science is messy — no animal is going to walk in perfect rhythm with the treadmill from start to stop.  What we do is capture all the data, and then find the motion capture portions where “Latte” and our other animals are keeping pace with the treadmill.  Incidentally, we measure various body dimensions on the animals each session (in case they grow or put on/lose weight) and we note the treadmill speed so we can calculate how fast they are moving.

“Latte,” and his room-mate “Mocha,” have been temporarily loaned to us thanks to the generosity of Jen Ciraolo.

News from the BFF Locomotion Lab

Just a brief post to point out we’ve updated our main lab page and that we have many new student members.  We’ve also seen our first lab alumni graduate or move on to other projects.

Just a reminder that you can follow us on Twitter: @BFFLocomotion and Facebook.

 

Why I love bearded dragons -or- Putting lizards through their paces in the BFF Lab

This has been an exciting week for my students and I in the BFF locomotion lab.  We have finally worked out multiple bugs in our system and have a bunch of very peppy and cooperative bearded dragon (Pogona vitticeps) lizards.  Corey Barnes, one of the BFF undergraduate seniors and PreVet Biology major, captured one of our trials on a young beardie we affectionately named Greenbeard.  As you can see in the video below, we entice the lizards to walk and run by tempting them with their favorite treats – crickets!  Although the lizards cannot get the treats immediately (we need the incentive), they each get a tasty cricket after each trial to reward them for a job well done.

Yes — these are juveniles … adult bearded dragons will be filmed as well.

The data we are collecting will form the basis of a comparative study of the relative movements of lizard forearms relative to the body across several species.  Given that the earliest mammals and dinosaurs had a forelimb posture not unlike lizards (in some respects, lizards have “held on to” the ancestral forelimb posture and anatomy of early reptiles and mammals), they are acting as a model to test hypotheses about the transition from sprawling to upright forelimb postures.

The treadmill was custom made for us by JogADog, and we’re capturing data from reflective markers using the OptiTrack V120 Trio system for motion capture.

The "Bonnan Beardies" crew with our treadmill (center) and motion capture system (left).  From left to right, Alex Lauffer, Kieran Tracey, Alex Hilbmann, and Corey Barnes.

The “Bonnan Beardies” crew with our treadmill (center) and motion capture system (left). From left to right, Alex Lauffer, Kieran Tracey, Alex Hilbmann, and Corey Barnes.

Why science definitions matter: a response to the NCSE’s Misconception Mondays

Dear fellow scientists and science educators: may I suggest the time has come to work together to standardize the major terminology of our field?  I don’t mean the terminology of specific disciplines, I am getting at the fundamentals here: what is science, and how do we effectively and efficiently communicate what a hypothesis, law, and theory are?

I am writing this post because I read with some dismay the recent National Center for Science Education’s blog Misconception Mondays: Hypotheses, Theories, and Laws, Oh My! by Stephanie Keep.  I encourage my readers to read her blog post and form your own opinions.  I want to be clear from the beginning that this is nothing personal about Stephanie Keep — her post simply caught my attention and serves as a spring board for discussing what I read and hear all too often from many of my colleagues.

The take home message from Keep’s post is this: it doesn’t matter what labels we give concepts in science, so long as science is being taught.  In essence, don’t get bogged down in semantics and lose the forest for the trees — it is more important that students understand the science.  At face value, this seems reasonable: don’t be pedantic be practical.

On deeper reflection, however, this attitude (an attitude shared by many in the sciences) is troublesome, because definitions and the meanings we attach to words do matter, especially for students and the public who vote on science issues.  Keep says:

People—especially scientists—like firm definitions. Science is full of technical terms that we learn to master (or learn to quickly look up on the Internet), and thanks to a mixture of precedent and state standards, many teachers keep making kids learn definitions for theory, law, and hypothesis in the introductory weeks of a new class. I’m not suggesting that kids shouldn’t learn what a hypothesis is—of course they should! Forming and testing hypotheses are fundamental parts of any scientific endeavor. But I am suggesting that we be willing to admit that there is often no good reason why something is called a law vs. a theory, or a hypothesis vs. a theory—and that’s okay.

But therein lies the fundamental problem with this approach — not just Keep’s approach, but, I would argue, the approach so many of us have been taught to take.  How can you teach a student how to test a hypothesis if you simultaneously tell them that we can’t tell if it’s a hypothesis or a theory?  These definitions do matter.

Something else is troublesome in Keep’s statement that, “many teachers keep making kids learn definitions for theory, law, and hypothesis in the introductory weeks of a new class.”  In any discipline, you learn what it is and how it works in the beginning so that you have a common language through which to teach and make sense of the core material.

If we are charged with doing science and with educating the public about science, shouldn’t we able to say: here is what science is, here are it’s limits, and here’s how the toolkit works?  Especially at the beginning of a class?  As scientists and science educators, we seem on the whole to be so circumspect about this because, I suspect, we appreciate that science is not about certainty but about probability.  Therefore, we are loathe to say we have a concrete definition because we fear that what we convey is an absolutism rather than messy reality.  Believe me — I understand and appreciate wanting to avoid teaching our students that science = unassailable truth.  But if this is a fear of looking too authoritarian, in my opinion, it has led to much confusion both among ourselves and the public at a time when science is under attack.

Dear scientists and science educators: it is okay to have firm definitions that define and describe what we do, and we need to give ourselves permission to be okay with that.  It is no longer okay for us to say to students, in essence, we can’t really describe or define what it is we do precisely, but you’ll know it when you see it.

It would be arrogant and presumptuous on my part to suggest I have the definitive answer or definitions for what we do, nor do any of us work and teach in a vacuum — much of what I teach my students is cobbled together from what I have found works for me as an instructor (borrowed and morphed from many gifted individuals), particularly the approach of a former graduate mentor, Dr. Ron Toth at Northern Illinois University.

But I would like to start a conversation about fundamentals.  Surely, science as a discipline is not an amorphous thing.  I suspect most of us would define it as a tool for understanding the natural world.  Many of us test hypotheses – these are predictive statements that can be tested and falsified which guide our research.  We often test our hypotheses under an explanatory umbrella we call a theory.  As an example, a paleontologist might test the relationships of various dinosaurs (a hypothesis called a phylogeny) using data collected from fossils, working under the explanation that they are closely or distantly related through common ancestry (a theory called biological evolution).

Laws, I will admit, often stick in many of our craws.  I have come to see scientific laws as testable descriptions of repeatable phenomena or processes.  If we define scientific laws in this way, we are now more clear about what should qualify.  For example, in her essay, Keep says,

Have you ever noticed that most of the “laws” in science tend to be in the physical sciences and astronomy? There aren’t a lot of “laws” in biology—in fact, I can’t think of any aside from Mendel’s Laws. Why is that? Is it because biology is a “soft science” while physics and astronomy are “hard sciences”? Not at all. It’s because people in those fields really liked the term “law.” No, really. That’s pretty much it.

I would argue that we do have laws in all the branches of science, we just don’t always call them that.  If a scientific law is a repeatable phenomenon or process, Genetic Dogma (DNA is transcribed and translated by RNA into proteins) is a law — it happens continuously in all living things, always the same — a repeatable phenomenon or process.  Natural Selection is a Law — all individuals vary, more individuals in a population are born than can survive, and those with variable traits that allow them reproduce viable offspring are “selected.”  Look at any population in the living world, and this process is on-going and repeatable.  How about calling the Cell Theory, the Cell Law?  After all, that living things are made of cells is pretty much a repeatably observable phenomenon.

This works for me and for teaching my students, but I am not suggesting I have the market cornered on this definition.  Rather, my point here is that when we have a clear definition, we can more easily comprehend what we are communicating to one another and to our students.  If I am testing a hypothesis, you and others know I am probably working under an explanation, a theory.  If I am testing a law, you and others know that if I find variation or the phenomenon does not repeat, I may be in a position to reject or modify that law.

We need to have this conversation because definitions do matter in science.  What you call something does matter, especially when you need it to convey a particular set of qualities.  True, there will always be exceptions to the definitions and the natural world is messy, but don’t let perfection be the enemy of progressScience is and should be definable — we don’t just know it when we see it.

I welcome any constructive feedback and ideas from all of my colleagues as to how we can and should move forward.  I want to thank Stephanie Keep for sparking this conversation.

For those who don’t know and who might be interested, I have outlined and explained my own approaching to teaching science and evolution.

The Richard Stockton College of New Jersey NAMS Research Symposium Abstracts Now On-line

The 2013 NAMS Research Symposium was very well attended, with over 40 posters and many more students and faculty.

The 2013 NAMS Research Symposium was very well attended, with over 40 posters and many more students and faculty.

This is a short post to announce that the NAMS Research Symposium abstracts are now on-line in HTML format as well as available in PDF format: NAMS Symposium 2014 -Abstract Book-.  We have 55 posters this year!

Find out more by going to the NAMS Symposium Research page.  We hope you can join us this Friday, April 25.

New students … same old rats

Just a short post to introduce you to some of the “newer” students in the Bonnan Lab: Kelsey Gamble and Caleb Bayewu.

Kelsey Gamble in Lab

Kelsey Gamble with Peter the rat, showing off the vest she designed for tracking our furry friends.

Undergraduate Caleb Bayewu with another rat we dubbed Jabba.

Undergraduate Caleb Bayewu with another rat we dubbed Jabba.

Today we were working with some Sprague-Dawley rats to track how much their forelimb is abducted at the elbow (pulled away from the side of the body) during locomotion.  We use an apparatus called the OptiTrack V120 which consists of 3 integrated infrared cameras that send out rapid pulses of IR light.  The rats wear a vest with two markers on the back which gives us the position of their body’s mid-line, and another small marker is affixed to their elbow (with the equivalent of eyelash glue) … with tender loving care, of course.

Peter the rat walking along his track, showing off his tracking vest and the tracking marker on his elbow.

Peter the rat walking along his track, showing off his tracking vest and the tracking marker on his elbow.

Peter the rat was more interested in exploring the lab than being measured for science.

Peter the rat was more interested in exploring the lab than being measured for science.

You know you’re a scientist when after months of trial and error and fiddling with the equipment, we literally jumped for joy today when we successfully recorded all five walking trials!  Why are we doing this?  Stay tuned …

What lies beneath the cartilage just might help you become a giant dinosaur

Figure 7 from our PLOS ONE paper -- This figure conveys the essence of our conclusions: as mammals become giants, their joints become ever more congruent with thinning articular cartilage.  For dinosaurs, the cartilage remains thick and the joint region expands.

You can read the paper for free by clicking here.

As I recently learned from a fall in which I broke one of my ribs, gravity is an irresistible force.

My poor broken rib.

My poor broken rib.

Gravity’s relentless pull has shaped the evolution of the skeleton in land vertebrates who have had to stand tall or be crushed.  Trees have it easy in that they only have to stand and sway (Vogel, 2003) – our skeletons have to resist gravity while on the move (McGowan, 1999; Carter and Beaupré, 2001).  If force equals mass times acceleration, then every time you walk, jog, or climb a flight of stairs, you are pummeling your limb skeleton with forces greater than your body weight!  But your bones are alive and they adapt to this daily abuse by changing their shapes to best resist those forces.  Therefore, paleontologists, like my colleagues and I, are obsessed with bone shape because it is a proxy record of how the limb skeleton adapted to support and move a fossil animal like a dinosaur.  Until we recreate living dinosaurs ala Jurassic Park, limb shape is the next best thing to putting a dinosaur or mastodon on a treadmill.

Many dinosaurs were successful in becoming land giants, whereas a comparative handful of land mammals have ever crossed the 1,000 kg mark (Farlow et al., 1995, 2010; Prothero and Schoch, 2002; Prothero, 2013).

The average dinosaur (excluding birds) weighed in at over 1 ton, whereas the average land mammal barely tips the scales at 1 kilogram. (c) 2013 M.F. Bonnan.

The average dinosaur (excluding birds) weighed in at over 1 ton, whereas the average land mammal barely tips the scales at 1 kilogram. (c) 2013 M.F. Bonnan.

Therefore, you might predict to see stark differences in limb skeleton shape between dinosaurs and land mammals … and yet you don’t!  In fact, getting big on land as a dinosaur or mammal usually results in stout columnar limb bones which resist weight combined with a decrease in activities like running or jumping (Christiansen, 1997, 2007; Carrano, 2001; Biewener, 2005; Bonnan, 2007).  In essence, you get an interesting but ultimately boring pattern that shows us there are only so many solutions to fighting gravity.

In a recently published open-access, peer-reviewed article in PLOS ONE, my colleagues and I have shown that there is one area of a limb bone that does change in different ways with increasing size between land mammals and dinosaurs: the joint-bearing region.

By Bonnan after Carter & Beaupre (2001) and Holliday et al. (2010).

Dinosaurs share the primitive tetrapod condition of retaining thick cartilaginous joints.  Diagram by Bonnan after Carter & Beaupre (2001) and Holliday et al. (2010).

Called the sub-articular surface, this zone supports the slippery and pliable articular cartilage that makes movement possible at joints by decreasing friction and absorbing stress.  We focused on this region because: 1) its shape should reflect how the bone beneath the cartilage was reacting to stress; and 2) recent work has shown that articular cartilage thickness in dinosaurs and land mammals differs, being very thick (several centimeters in some cases) in the former and very thin (only a few millimeters) in the latter (Graf et al., 1993; Egger et al., 2008; Bonnan et al., 2010; Holliday et al., 2010; Malda et al., 2013).

What we found surprised us.  As land mammals become giants, their sub-articular regions become narrow with well-defined surface features.  In contrast, becoming a giant sauropod involves an increase in the sub-articular region combined with a subdued, gently convex profile.

Figure 3 from our PLOS ONE paper -- On the X-axis, the sub-articular bone region narrows significantly with increasing size, and the shapes of these regions become more convex and/or distinct.

Figure 3 from our PLOS ONE paper — On the X-axis, the sub-articular bone region narrows significantly with increasing size, and the shapes of these regions become more convex and/or distinct.

Figure 5 of our PLOS ONE paper -- .  In particular, the sub-articular region expands tremendously whereas its overall shape remains gently convex.

Figure 5 of our PLOS ONE paper — . Along the X-axis, the sub-articular region of the humerus expands tremendously whereas its overall shape remains gently convex.

Why this difference?  Our results suggest two interrelated relationships.  First, sub-articular bone profile and cartilage thickness go hand-in-hand.  In living animals, those with thick articular cartilage (alligators and guinea fowl birds in our sample) have expanded sub-articular regions with gentle convexity, whereas those with thin articular cartilage (the living mammals in our sample) retain narrow and increasingly well-defined sub-articular regions.  Hence, seeing the narrow and well-developed sub-articular regions in fossil elephants and Paraceratherium show convincingly that they had very thin articular cartilage.  In contrast, the expanded and gently convex ends of the limb bones in sauropods appear to be well-correlated with thick articular cartilage.

Second, and more intriguing, these differences suggest different adaptations to becoming a giant constrained by cartilage thickness.  In mammals, it has been well-documented that the best way to disperse stress through thin cartilage is to increase the surface contact area (Simon et al., 1973; Egger et al., 2008).  In other words, mammals spread the load by narrowing their joints and increasing surface complexity, allowing the bones to articulate closely.  As we say in the paper, becoming a giant mammal means developing highly congruent joints.  In contrast, becoming a giant sauropod dinosaur involves retaining thick articular cartilage that presumably deforms under pressure.  This would go a long way to explaining the expanded sub-articular surfaces we see in sauropods: deforming a thick block of cartilage safely likely requires enough space over which to spread the load.

What does this all have to do with the frequency of gigantism?  We speculate that articular cartilage thickness may have a limiting effect on size.  If in mammals the best way to spread stress through a joint is by thinning the cartilage and increasing congruence, you are going to get to a point where the joints are as congruent as possible and the cartilage cannot get any thinner.  In contrast, retaining thick articular cartilage at large size might have been one factor that contributed to the frequent evolution of so many dinosaur giants.  Therefore, our data suggest that the rarity of large land mammals may be due, in part, to their highly congruent limb joints with thin articular cartilage, whereas the success of sauropod dinosaurs as giants may be tied, in part, to their retention of thick articular cartilage.

Figure 7 from our PLOS ONE paper -- This figure conveys the essence of our conclusions: as mammals become giants, their joints become ever more congruent with thinning articular cartilage.  For dinosaurs, the cartilage remains thick and the joint region expands.

Figure 7 from our PLOS ONE paper — This figure conveys the essence of our conclusions: as mammals become giants, their joints become ever more congruent with thinning articular cartilage. For dinosaurs, the cartilage remains thick and the joint region expands.

As we say in the article, we in no way intend this to be the last word on dinosaur gigantism or imply that this was the only explanation for their success as land giants.  In fact, we hope our work, which was limited to 2-D profiles of the sub-articular surfaces, will be expanded upon using newer, 3-D technology by future researchers (see for example recent work by Tsai and Holliday [2012]).  So the next time you take a walk, think about and appreciate how a narrow slice of cartilage helps ensure your bones glide past one another and don’t smack together.  I only wish thick, pliable cartilage was in my poor rib, which deformed and snapped under stresses far, far less than those which pummeled the limbs of giant mammals and dinosaurs.

My poor broken rib revisited.

My poor broken rib revisited.

You can read the paper, for free, here.

My Co-authors

This study would not have been published without the help and perseverance of my co-authors.

RayWRay Wilhite is a kindred sauropod spirit, and an associate professor of veterinary anatomy at Auburn College who knows far more about alligator anatomy than I can ever hope to amass.  His assistance in helping me twice procure, dissect, and prepare alligators from the Louisiana Rockefeller Wildlife Refuge was invaluable.  He also introduced me to Ruth Elsey, the goddess of alligators, whom ended up as an author on one of our previous forays into the relationship between cartilage thickness and shape (Bonnan et al., 2010).

Ray comments on our paper: “For most of the history of vertebrate paleontology scientists and explorers focused on finding new fossils and organizing them into meaningful taxonomic groups.  Recently, however, many paleontologists have shifted their focus to trying to understand the biology and functional morphology of extinct species.  I believe our study has moved the discussion forward regarding the morphological adaptations of sauropods that allowed the to grow to such gigantic proportions.  Our study provides a possible clue about why sauropod humeri and femora have expanded ends and large terrestrial mammals do not.  The revelation in recent years that there is most likely a significant portion of the articular surface missing in preserved sauropod limb bones is supported by this study.  Slowly but surely we are beginning to not just put flesh on the bones, but put the bones on the bones and see what lay between.”

Simon L. Masters was a former graduate student of mine, and his thesis on the ontogeny of the forelimb in Allosaurus was to SimonMform the basis of the theropod dinosaur set in our paper.  Simon, along with Jim Farlow, previously helped with the writing and analysis of using shape-based statistics for determining sex from the alligator femur (Bonnan et al., 2008).  Simon has done well for himself and I’m happy to say he is inspiring a new crop of STEM students as a high school teacher at the all-girls Beaumont School in Cleveland Heights, Ohio.

AdamYAdam M. Yates has been an invaluable friend and colleague, and his contribution to this paper allowed us to compile a great deal of morphometric data on “prosauropods.”  More specifically, when he, Johann Neveling, and I were working up a different paper on what would become our new dinosaur, Arcusaurus (Yates et al., 2011), I began running morphometric analyses of the distal ends of dinosaur and archosaur humeri because we had only the distal end of that animal’s humerus.  That figure never made the final paper but it was my first hint that something interesting was going on in dinosaurs: as I plotted “prosauropod” and sauropod humeri, I could see that there was this trend towards expansion and slight convexity.  I wanted to note that in our Arcusaurus paper, but Adam encouraged me to save the data for a later time … and that time is now.

ChristineGChristine Gardner was one of my many successful undergraduate honors students.  While working with me, she measured nearly all of the Afrotherian mammals in our paper for her undergraduate thesis on long bone scaling in these mammals.  Her hard work at collecting and analyzing her dataset not only gave her honors in finishing her undergraduate work, but contributed in a substantial way to our paper.  She has also journeyed with me out to the field a number of times, and has successfully landed herself in the graduate program at the South Dakota School of Mines.

Christine had this to say about our study: “It was the summer between my junior and senior years when I officially began my undergraduate thesis project. Obviously a new experience for me, I didn’t entirely know what to expect. Little did I know I’d watch my raw data not only yield my honors thesis, but eventually become part of much bigger research which has ended with my name being published. Not many students get to share this privilege before finishing their Master’s thesis.”

AdamAAdam Aguiar is one of my new colleagues at the Richard Stockton College of New Jersey who specializes is understanding the molecular-level details of bone and cartilage biology.  After the first draft of the paper, he was invaluable at providing insight into thinking about articular cartilage and its responses to shock and stress.  This gave the paper a new lease on life, and I doubt we would have been successful on our next submission had it not been for his encouragement and contribution.

Acknowledgments

We thank the many institutions and individuals that provided us with access to specimens for this study.  I cannot possibly list all of them here: much of the archosaur data was collected for previous studies (Bonnan, 2004, 2007; Bonnan et al., 2008, 2010)  and the heartfelt thanks and appreciation expressed in those references continues more strongly than ever here.  For the present study, we wish to thank the following institutions and staff: AMNH: N. B. Simmons and staff (Mammalogy), J. Meng, J. Galkin, and staff (Fossil Mammals); FMNH: W. Stanley and staff (Mammalogy), K. D. Angielczyk, W. Simpson, and staff (Fossil Mammals); UNMH: R. Irmis, M. Getty, and staff; CLQ: M. Leschin; SAM: A. Chinsamy-Turan and staff; BPI: B. Rubidge and staff.  We thank Kimberley Schuenman at WIU for collecting data on felids used in this study.  Feedback from Gregory S. Paul, Henry Tsai, and Stephen Gatesy at the 2012 Society of Vertebrate Paleontology meeting further improved our manuscript.  Discussions with Jason Shulman at the Richard Stockton College of New Jersey on static physics were helpful.  Donald Henderson and an anonymous reviewer provided useful comments, critiques, and suggestions on a first draft of this manuscript.  We are also indebted to PLOS ONE editor Peter Dodson for shepherding our manuscript through the PLoS system, and his feedback, comments, and suggestions.

Last but not least – a great big thank you to my new employer, the Richard Stockton College of New Jersey, for helping with publication costs!  Thank you Stockton and the Grants Office, particularly Beth Olsen!

 An Important Aside on Methods and Why We Did What We Did

  • We chose to focus on evolutionary lines of mammals and dinosaurs that gave rise to the very largest land species.  For mammals, we focused on the placental (eutherian) lines called Afrotheria and Laurasiatheria because elephants and Paraceratherium, the giant rhino relative, descended from these.  For dinosaurs, we focused on the Saurischians because the giant, long-necked “brontosaurs” called sauropods were members. We also selected smaller-bodied relatives of these giants in their family trees to examine how similar or different the sub-articular zones of these giants were to their smaller relatives.  To analyze shape, we used a computer program called Thin-Plate Splines that tracks and compares landmark coordinates on bones.
  • Because bony landmarks and sub-articular surfaces were not always anatomically homologous between archosaurs and mammals, we avoided issues of mixing non-homologous areas in our data by running the analyses on these two groups separately.
  • Why did we use a two-dimensional analysis instead of a three-dimensional analysis?  Undoubtedly, three-dimensional shape analysis would have further enhanced our interpretation of sub-articular shape patterns.  However, a number of challenges prevented such an approach:
    • First and most significantly, the data collected in this study span a period of over 10 years during which time cost-effective and portable three-dimensional scanning technologies for acquiring large bone geometries have only recently started to become available.  Had we access to these technologies ten years prior, we would have utilized them, as we plan to utilize such approaches in future studies.
    • Second, our main goal in this study was to quantify whether or not there were significant differences in the scaling patterns of surface morphology between eutherian mammal and saurischian dinosaur long bones, and whether such differences were correlated with known differences in articular cartilage properties.  We emphasize that our goal was not to realistically recreate joint surfaces or establish precise measures of joint articulation, nor do we propose how the three-dimensional shape of the subchondral bone is used to reconstruct joint geometry.  Our selection of the humerus and femur furthers our goal: these are long bones in which a significant portion of the subarticular surfaces can be reliably captured and interpreted in two dimensions.
    • Finally, third, two-dimensional data is valuable, comparable to previous studies, and provides a good first-level approximation of scaling patterns.  Just as linear morphometrics informed and directed the study of two-dimensional geometric morphometrics (GM) of long bones, so, too, can two-dimensional GM illuminate where future three-dimensional GM studies can make the best impact.  Our study is certainly not the last word on long-bone scaling and subarticular patterns in non-avian dinosaurs.  Rather, we hope it inspires and provides the basis for research incorporating three-dimensional technologies in years to come.

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